PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.006340.1
Common NameCsa_5G420280, LOC101209438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 272aa    MW: 30425.7 Da    PI: 7.0627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.006340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10181224755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Cucsa.006340.1 181 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 224
                     5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-12171231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-13174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-11176228No hitNo description
SMARTSM003531.0E-11180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEKNGGGYLK SLAIGKGHDH QNPNGDFVFR DTTNYQLGQQ QQQSLINFGH KMNNESLLSF  60
EAQGICQLDL TYNWDDQQRV MEDPNCFQTA TNHNNYSPSK DHHHHNKNGD NGSVYEWLYS  120
ESTTDFSDSI QEAEGTQEIV PNHKRSHTTG ESSGSVCKKQ CTAAPKKQKP KSATAKDPQS  180
IAAKNRRERI SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQLQVKIL ATDEFWPVQG  240
GKAPDISQVK EAIDVILSSQ RERSSSSNSE K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818930.0LN681893.1 Cucumis melo genomic scaffold, anchoredscaffold00055.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140364.10.0PREDICTED: putative transcription factor bHLH086
SwissprotQ9FJ009e-60BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A0A0KN550.0A0A0A0KN55_CUCSA; Uncharacterized protein
STRINGVIT_14s0006g01470.t012e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-57ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]